MmuEX0015103 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30820576-30823447:+
Coord C1 exon
chr17:30820576-30820656
Coord A exon
chr17:30821076-30821192
Coord C2 exon
chr17:30823328-30823447
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACCGTTTCTGCTCTTCCCAGGTG
3' ss Score
11.01
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
GGTCTTCTGCAGTATTATGATGACCTGTGCCAGGAAGTGCCTTCTGTGTTCGTCAACCTGATGACCCCCAAAATGAAGAAG
Seq A exon
GTGGAGTCCGTCCTGAGGCAAGGGCTCACAGTGCTGACCTGGTCCTCGCTAATGCTGGAGAGCTTCTTCAAAGAGGTTGAGTCCGTTTTGGATATGTTCAACCAGCTTTTAAAGAAG
Seq C2 exon
GTCAATGACCTGTGTGAGATGCACATCGACACAGTTCTGAAGGAGATTGCCAAGACATTGCTAATCTCCTTGTCAGATAGCGGCACCACCAAAGTAGAAGACATGCTGACCCTCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(4.6=100)
A:
PF083857=DHC_N1=PD(4.1=59.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTATTATGATGACCTGTGCC
R:
CTCGTTGAGGGTCAGCATGTC
Band lengths:
194-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: