GgaEX6029622 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30679686-30681399:-
Coord C1 exon
chr3:30681236-30681399
Coord A exon
chr3:30680396-30680498
Coord C2 exon
chr3:30679686-30679790
Length
103 bp
Sequences
Splice sites
3' ss Seq
AGTCTTGTTCAATTTTAAAGGTA
3' ss Score
5.87
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GAAGCAAAACGTTTTCAGAATATTGATAAGTCATGGGTAAGAATAATGCAACGAGCTCATGAAAACCCAAATGTAATTGTCTGCTGTGTTGGAGATGAGACTATGGAGCAACTTCTGCCTCACTTACATGAACAACTGGAAGTATGTCAGAAGTCACTTACAGG
Seq A exon
GTACTTAGAGAAGAAGAGGCTACTGTTTCCTAGATTCTTTTTTGTTTCTGATCCTGTCCTTCTTGAAATTCTTGGACAAGCAAGTGATTCTCATACAATTCAG
Seq C2 exon
CCACATCTGCTTTCCATATCTGACAATATAAATGAAGTAGAATTTCACCAAAAGGATTATGATCGCATACTGGCAGTCATATCAAGAGAAGGAGAAAAAATACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'38-40,'38-39,39-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(13.1=100)
A:
PF083938=DHC_N2=FE(8.3=100)
C2:
PF083938=DHC_N2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAAAACGTTTTCAGAATATTGA
R:
TGACTGCCAGTATGCGATCAT
Band lengths:
243-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]