MmuEX6076586 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30862027-30865212:+
Coord C1 exon
chr17:30862027-30862190
Coord A exon
chr17:30863731-30863833
Coord C2 exon
chr17:30865108-30865212
Length
103 bp
Sequences
Splice sites
3' ss Seq
CGCTCTTGACTCCTTTGAAGGTA
3' ss Score
6.6
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GAAGCCAAGCGTTTCCAGAATATTGACAAGTCATGGATAAAGATCATGCAGCGAGCTCATGAGAACCCCAACGTGATCAGCTGCTGTGTCGGGGATGAGACCATGGGGCAGCTCCTGCCCCATTTACACGAGCAGTTGGAAGTCTGTCAGAAGTCCCTCACAGG
Seq A exon
GTATTTGGAAAAGAAGAGGTTGCTATTTCCAAGATTCTTCTTTGTCTCCGATCCGGTTCTGCTGGAAATCCTCGGACAGGCCAGCGACTCCCACACCATTCAG
Seq C2 exon
CCACATCTCCCTGCAGTGTCTGACAACATCAATGAGGTGACCTTCCATGCTAAAGACTACGATCGGATGACGGCCGTTATATCAAGAGAAGGAGAAAAAATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'42-39,'42-38,43-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(13.1=100)
A:
PF083938=DHC_N2=FE(8.2=100)
C2:
PF083938=DHC_N2=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCAAGCGTTTCCAGAAT
R:
TCTTGATATAACGGCCGTCATCC
Band lengths:
251-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: