DreEX6095972 @ danRer10
Exon Skipping
Gene
ENSDARG00000056888 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr24:33733239-33735377:+
Coord C1 exon
chr24:33733239-33733392
Coord A exon
chr24:33734587-33734853
Coord C2 exon
chr24:33735249-33735377
Length
267 bp
Sequences
Splice sites
3' ss Seq
GAATTTTTTACTCTTTGCAGGAG
3' ss Score
8.02
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
Exon sequences
Seq C1 exon
ATATAATGCTCCATTTAAGCCCACTATCCAGCAGTGGGTGCAGAAGTTGTCAAACAGTTCAGAGGTGATCGAGAAGTGGCTCACAGTACAAAATCTGTGGCTGTACCTGGAGGCTGTGTTTGTGGGTGGAGACATTGCCAAACAACTGCCACAG
Seq A exon
GAGGCTAAACGCTTCCAGAACATTGACAAATCATGGCAGAGGATAATGCAGCGGGCACATGAGATTCCTGGTGTGGTTCAGTGCTGTGTCGGGGATGAGACGCTGCAACAGCTGCTGCCACACCTGCTGGAACAGCTGGAAGTGTGTCAGAAATCTCTGAGCGGATACCTGGAGAAGAAACGTCTCGTCTTCCCGAGGTTCTTTTTCGTCTCTGACCCCGTCCTGTTGGAGATACTGGGTCAAGCATCTGACTCACACACTATACAG
Seq C2 exon
GCTCATCTCTTGAACCTTTTTGATAATGTGAACAGAGTTGTGTTTCATGAGAAAAACTATGACCAGATACTGAGCTTTCAGTCACAGGAAGGGGAAACAGTGAATATGAGTGAACCAATTAATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056888-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.070
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.4=100)
A:
PF083938=DHC_N2=FE(21.4=100)
C2:
PF083938=DHC_N2=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATTTAAGCCCACTATCCA
R:
CTGGGCATTAATTGGTTCACTCA
Band lengths:
276-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]