MmuEX6053067 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28232141-28237144:+
Coord C1 exon
chr15:28232141-28232294
Coord A exon
chr15:28234341-28234504
Coord C2 exon
chr15:28236988-28237144
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTCCAATGTTATTTCTACAGGAA
3' ss Score
8.53
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTACAATATGCCATTCAAAGCCCAGATTCAAAAATGGGTGCAGTGCCTTTCCAACTCAACAGACATCATTGAGAACTGGATGACCGTTCAAAACTTGTGGATTTATCTAGAAGCTGTCTTCGTGGGAGGAGACATTGCCAAGCAGCTGCCCAAG
Seq A exon
GAAGCCAAGCGCTTTTCCAATATAGATAAGTCTTGGGTGAAGATCATGACACGGGCACATGAGATACCAAATGTGGTTCAGTGTTGTGTTGGAGATGAGACCATGGGGCAGCTACTGCCACACTTACTGGACCAGTTGGAAATCTGCCAGAAGTCGCTCACAGG
Seq C2 exon
ATACTTGGAGAAGAAAAGGCTGTGTTTTCCTCGCTTCTTTTTCGTCTCAGATCCCGCTCTGCTGGAGATTCTGGGCCAGGCATCGGACTCCCACACCATCCAGGCCCATTTGCTGAACGTGTTTGACAACATTAAAACTGTCAAGTTCCATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAAATGGGTGCAGTGCCT
R:
TTCAGCAAATGGGCCTGGATG
Band lengths:
244-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: