BtaEX0011600 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59367411-59371667:+
Coord C1 exon
chr20:59367411-59367564
Coord A exon
chr20:59369484-59369647
Coord C2 exon
chr20:59371511-59371667
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTGTTACCTTGTTCTCATAGGAA
3' ss Score
9.36
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTACAATATGCCATTCAAAGCCCAGATTCAACAGTGGGTACAACACCTTTCCAACTCAGCAGACATAATTGAGAGCTGGATGATGGTGCAAAACTTGTGGATCTACCTAGAAGCCGTCTTTGTGGGAGGAGACATTGCCAAGCAACTTCCCAAG
Seq A exon
GAAGCCAAGCGCTTTTCCAACATCGATAAATCTTGGGTGAAGATCATGACTCGGGCACATGAGATGCCTAACGTGGTTCAGTGCTGTGTTGGAGATGAGACCATGGGGCAGCTGTTACCACACTTGCTGGACCAGTTGGAAATCTGCCAGAAATCCCTTACGGG
Seq C2 exon
ATACTTGGAGAAAAAACGACTTTGCTTTCCCCGGTTCTTCTTCGTCTCGGACCCCGCTCTTCTGGAGATTCTGGGTCAGGCATCAGACCCACATACGATACAAGCCCATTTACTGAATGTGTTCGACAACATTAAGACTGTCAAGTTCCATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'31-31,'31-30,32-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATTCAAAGCCCAGATTCA
R:
TCGTATGTGGGTCTGATGCCT
Band lengths:
244-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development