GgaEX6020594 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78541634-78543422:+
Coord C1 exon
chr2:78541634-78541787
Coord A exon
chr2:78542451-78542614
Coord C2 exon
chr2:78543266-78543422
Length
164 bp
Sequences
Splice sites
3' ss Seq
CCCTCGCTATATTTAAACAGGAA
3' ss Score
7.68
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ATACAACACGCCCTTCAAGACACAGATTCAGAAATGGGTGCACTATCTTTCCAACACGACAGATATCATTGAGAACTGGATAACTGTGCAGAACTTGTGGATTTATTTAGAAGCTGTTTTTGTTGGTGGTGACATAGCAAAGCAGCTTCCAAAG
Seq A exon
GAAGCAAAGCGTTTCTCTAACATTGATAAATCCTGGGTAAGGATCATGACTCGAGCTCACGAAACACCTAATGTTGTTCAGTGCTGCATTGGAGATGAAATCATGGGACAGTTACTACCACATTTACTAGAACAGCTTGAAATCTGTCAGAAATCACTCACAGG
Seq C2 exon
GTACCTGGAGAAGAAGCCCCTCCTATTTCCACGATTCTTCTTTGTGTCAGATCCTGCCCTATTAGAAATTCTTGGCCAGGCATCAGATTCTCACACTATACAAGCACATCTGCTGAATGTCTTTGACAACATTAAAACTGTCAAGTTCCATGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'35-39,'35-38,36-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACGCCCTTCAAGACACAG
R:
GTGAGAATCTGATGCCTGGCC
Band lengths:
244-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]