RnoEX0028541 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:81029065-81044939:+
Coord C1 exon
chr2:81029065-81029218
Coord A exon
chr2:81031205-81031368
Coord C2 exon
chr2:81044783-81044939
Length
164 bp
Sequences
Splice sites
3' ss Seq
CCAATGTGTTATTTCTACAGGAA
3' ss Score
9.45
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTACAACATGCCATTCAAAGCCCAGATTCAAAACTGGGTTCAATGCCTTTCCAACTCAACAGACATCATTGAGAACTGGATGACCGTTCAAAACTTGTGGATTTATCTAGAAGCTGTCTTCGTGGGAGGAGACATTGCCAAGCAGCTTCCCAAG
Seq A exon
GAAGCCAAGCGCTTTTCCAATATAGATAAGTCTTGGGTGAAGATCATGACGCGGGCACATGAGATACCAAATGTGGTTCAGTGTTGTGTTGGCGATGAGACCATGGGGCAGCTGTTGCCACACTTACTGGACCAGCTGGAAATCTGCCAGAAGTCACTCACAGG
Seq C2 exon
ATACTTGGAGAAGAAACGGCTGTGCTTTCCTCGCTTCTTCTTTGTCTCGGATCCCGCTCTGCTGGAGATTCTGGGCCAGGCATCTGACTCCCACACCATCCAGGCCCATTTGCTGAATGTGTTTGACAACATTAAAACTGTCAAGTTCCATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.3=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCCATTCAAAGCCCAGA
R:
CTGGATGGTGTGGGAGTCAGA
Band lengths:
252-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]