GgaEX6029656 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30627102-30630423:-
Coord C1 exon
chr3:30630302-30630423
Coord A exon
chr3:30628689-30628804
Coord C2 exon
chr3:30627102-30627304
Length
116 bp
Sequences
Splice sites
3' ss Seq
TATATTAATGTAATATTTAGATA
3' ss Score
4.2
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGGTGCAGCACTGGATCTAAAGGCTTGCCCACCTAAACCATTCCGCTGGATTCTTGACATGATGTGGCTAAACTTAGTGGAAATGAGTAAACTTCCACAGTTTGCAAAAATTTTGAATCAG
Seq A exon
ATAACCAGTAATGAAAAGGGATGGAAAAATTGGTATGATAAAGACGCTCCTGAGGAAGAAATTATTCCTGATGGATATGATTCACTTGACACCTTCCACAGGCTTTTACTTATCAG
Seq C2 exon
ATCTTGGTGTCCAGACCGGACTCTTTCCCAAGCCAGGAAGTACATTGCAAGTTCCTTGGACGAGAAATATACAGAACCAGTCATTCTGAATTTAGAAAAAACTTGGAAGGAAAGTGATACACGAACACCTCTGATCTGTTTCTTGTCTATGGGATCTGATCCAACAATTCAAATTGATTCATTGGCTAGGAAGCTTAAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'84-86,'84-85,85-86=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.9=82.9)
A:
PF0302810=Dynein_heavy=FE(5.5=100)
C2:
PF0302810=Dynein_heavy=FE(9.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTAAAGGCTTGCCCACC
R:
ACAGATCAGAGGTGTTCGTGT
Band lengths:
248-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]