BtaEX0011624 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12783875-12786971:+
Coord C1 exon
chr23:12783875-12783996
Coord A exon
chr23:12784599-12784717
Coord C2 exon
chr23:12786769-12786971
Length
119 bp
Sequences
Splice sites
3' ss Seq
AATTAGCTTGTGTACTTTAGATC
3' ss Score
4.72
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGGGAGCAGCTCTGGATCTGAAAGCCTGCCCTCCCAAGCCGTTTCGCTGGATCCTCGATATGACCTGGCTGAATCTTGTGGAACTGAGTAAACTTCCACAGTTTGCAGAAATTATGAACCAG
Seq A exon
ATCTCTCGTAATGAGAAAGGCTGGAAAAGTTGGTTTGATAAAGATGCTCCGGAGGAGGAAATCATCCCTGATGGATATAATGACTCACTGGATACCTGCCGCAAACTTTTACTTATCAG
Seq C2 exon
GTCTTGGTGCCCAGACCGTACTGTTTTTCAAGCAAGAAAGTATATTGCAGATTCTTTGGAGGAAAAGTACACGGAACCAGTTATCTTAAATCTGGAGAAAACTTGGGAAGAAAGTGATACGAGAACACCTCTGATATGTTTTCTGTCCATGGGATCCGATCCCACAATTCAAATTGACGCACTGGCCAAGAAACTGAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'94-93,'94-92,95-93
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.9=82.9)
A:
PF0302810=Dynein_heavy=FE(5.6=100)
C2:
PF0302810=Dynein_heavy=FE(9.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGGCTGAATCTTGTGG
R:
CTTGGCCAGTGCGTCAATTTG
Band lengths:
252-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development