RnoEX6062051 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9487290-9495056:+
Coord C1 exon
chr20:9487290-9487411
Coord A exon
chr20:9489844-9489962
Coord C2 exon
chr20:9494854-9495056
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGCTGGCTTATTGCCCTCAGATA
3' ss Score
7.24
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGGAGCAGCCCTGGACCTGAAGGCGTGCCCCCCCAAGCCCTTCCGCTGGATCCTGGACATGACGTGGCTGAACCTTGTGGAGCTCAGTAAGCTCCCGCAGTTTGCAGAAATTATGAACCAG
Seq A exon
ATATCTCGGAATGAGAAGGGGTGGAAAAACTGGTTTGATAAGGACGCCCCAGAGGAGGAGATCATCCCCGATGGATACAATGATTCTTTGGACACCTGCCGCAAGCTTCTGCTTATCAG
Seq C2 exon
ATCGTGGTGCCCAGACCGCACTGTTTTCCAAGCGAGAAAGTACATCGCCGACTCTCTCGAGGAGAAGTACACGGAGCCGGTTATCCTAAACCTGGAGAAGACCTGGGAGGAAAGTGACACACACACGCCTCTGATCTGTTTCCTGTCCATGGGCTCCGATCCCACCATCCAGATCGACGCGTTGGCCAAGAAACTGAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'123-131,'123-130,124-131=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.9=82.9)
A:
PF0302810=Dynein_heavy=FE(5.6=100)
C2:
PF0302810=Dynein_heavy=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAACCTTGTGGAGCTCAG
R:
CCAGCTTCAGTTTCTTGGCCA
Band lengths:
258-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]