GgaEX6029715 @ galGal4
Exon Skipping
Gene
ENSGALG00000010186 | CAPN1
Description
Calpain-1 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:P00789]
Coordinates
chr3:29683735-29684410:-
Coord C1 exon
chr3:29684371-29684410
Coord A exon
chr3:29684062-29684127
Coord C2 exon
chr3:29683735-29683792
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACCTCTCTTTCTGGCCTCAGGAA
3' ss Score
10.35
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGAGCTGGATGAGGAGATCTCGGCAGACCTGGCAGATGAG
Seq A exon
GAAGAAATAACCGAGGACGACATTGAGGATGGTTTCAAGAATATGTTCCAGCAGCTGGCAGGGGAG
Seq C2 exon
GACATGGAAATCAGCGTCTTCGAGCTCAAGACGATTCTGAACAGAGTGATCGCCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186-'17-19,'17-17,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGATGAGGAGATCTCGG
R:
GTCTGGCGATCACTCTGTTCA
Band lengths:
96-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]