RnoEX6038894 @ rn6
Exon Skipping
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17746930-17747251:+
Coord C1 exon
chr9:17746930-17746969
Coord A exon
chr9:17747050-17747115
Coord C2 exon
chr9:17747194-17747251
Length
66 bp
Sequences
Splice sites
3' ss Seq
CCCTCCATCCTTCTCCCCAGGAG
3' ss Score
10.63
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GTTGCTGGATGAAGTCAACATGCTTGAGCAACTCCAAGAG
Seq A exon
GAGACCATCACTGATGCAGATTTGGACCAGAATTCTGTAGAGTTGTTTGAGACGTTGGCAAACCGG
Seq C2 exon
GACAGCCAAGTAGATATGTATGACCTACAAAAACTTCTCAACAAGATGTCAAGTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025-'16-23,'16-21,17-23=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
PF138331=EF-hand_8=PU(31.7=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGATGAAGTCAACATGCT
R:
TTTACTTGACATCTTGTTGAGAAGTT
Band lengths:
95-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]