MmuEX6077893 @ mm10
Exon Skipping
Gene
ENSMUSG00000058626 | Capn11
Description
calpain 11 [Source:MGI Symbol;Acc:MGI:1352490]
Coordinates
chr17:45632875-45633408:-
Coord C1 exon
chr17:45633369-45633408
Coord A exon
chr17:45633040-45633105
Coord C2 exon
chr17:45632875-45632932
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCCTTTTCCCTAGGAG
3' ss Score
12.46
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTTGCTGGATGACGCCAACCGGTTTGAACATCTCCAAGAG
Seq A exon
GAGACTGTCACTGACAAGGATTTGGACAAGGATTCTCTTCAGCTGTTTAAGATAATGGCAAACGAG
Seq C2 exon
GATGGCGAAGTGGATATGTATGCACTACACAAACTTCTCAACAGGATGACAGCTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058626-'25-20,'25-19,26-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTGGATGACGCCAACC
R:
TAGCTGTCATCCTGTTGAGAAGT
Band lengths:
95-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types