Special

GgaEX6030702 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr3:52481193-52483520:+
Coord C1 exon
chr3:52481193-52481318
Coord A exon
chr3:52482614-52482722
Coord C2 exon
chr3:52483341-52483520
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTGATTGTGTTGATTTCAGAAA
3' ss Score
7.37
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATGGAGTCCTTGTTCGGCAGTCTGCCAGAAATGCTGGATTTTCAGAAGGTGTTTTTGGAGACCCTTGAAGATGGAATATCTTCTTCCTCGGACTTTAACACACTGGAGACACCGTCTCAGTTCCGG
Seq A exon
AAATTGCTGTTTTCCCTGGGAGGATCGTTTCTGTATTATGCTGACCACTTCAAACTGTACAGTGGCTTTTGTGCCAACCACATCAAAGTTCAGAAAGTTCTTGAGAGAG
Seq C2 exon
CCAAAACAGACAGTGCATTTAAGGCCTTCTTGGATGCTCGCAATCCTACAAAGCAACACTCCTCTACGCTGGAGTCGTATCTCATAAAGCCTGTTCAGAGAGTGCTGAAATATCCTCTGCTTTTGAAAGAGCTGGTGTCCCTGACAGACAACGAGAGTGAGGAGCACTACCATTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(31.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCTTGTTCGGCAGTCTG
R:
CCAGCTCTTTCAAAAGCAGAGGA
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]