RnoEX6000754 @ rn6
Exon Skipping
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44422551-44425082:+
Coord C1 exon
chr1:44422551-44422676
Coord A exon
chr1:44423417-44423525
Coord C2 exon
chr1:44424903-44425082
Length
109 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCTCCTCCCTTCTAGAAA
3' ss Score
11.79
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATGGAGTCACTTTTTGGGAGCTTGCCAGAGATGCTGGAATTTCAAAAGGTGTTCCTGGAGACTCTGGAGGATGGGATCTCTGCTTCCTCAGACTTTAGTGTCCTGGAAACCCCCTCACAGTTTCGG
Seq A exon
AAATTGCTGTTCTCTCTCGGAGGCTCTTTCCTCTACTACGCAGATCACTTTAAACTGTACAGTGGATTCTGCGCCAACCACATTAAAGTACAGAAGGTCCTAGAGCGAG
Seq C2 exon
CTAAAACCGACAGAGCTTTCAAGGCTTTTCTGGACGCGCGGAACCCCACGAAGCAGCACTCCTCCACGCTGGAGTCATATCTCATCAAGCCTGTTCAGAGAGTGCTCAAGTATCCTCTGCTCCTCAAGGAGCTCGTGTCACTGACTGACCATGAGAGCGAAGAACACTATCACCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728-'39-26,'39-25,41-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(31.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGGAGCTTGCCAGAGATG
R:
TCAGTGACACGAGCTCCTTGA
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]