Special

BtaEX6050114 @ bosTau6

Exon Skipping

Gene
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr9:93228375-93233644:+
Coord C1 exon
chr9:93228375-93228500
Coord A exon
chr9:93229571-93229679
Coord C2 exon
chr9:93233465-93233644
Length
109 bp
Sequences
Splice sites
3' ss Seq
AACTTTCCCTCTCTTTCTAGAAA
3' ss Score
10.99
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGGAGTCACTTTTTGGAAGCTTGCCAGAGATGCTTGAATTTCAAAAGGTGTTTCTCGAGACCCTGGAGGATGGGATTTCAGCGTCGTCTGACTTTAACATACTTGAAACCCCCTCGCAGTTCAGA
Seq A exon
AAACTGCTGTTTTCCCTCGGAGGCTCTTTCCTTTATTATGCGGACCACTTTAAACTGTATAGCGGATTCTGTGCTAATCATATTAAAGTACAGAAGGTTCTAGAGCGAG
Seq C2 exon
CTAAAACTGATAAAGCCTTTAAGGCTTTTCTGGATGCCCGGAACCCCACCAAGCAGCACTCCTCCACGCTGGAGTCTTACCTCATCAAGCCAGTTCAGAGGGTGCTCAAGTACCCGCTGCTGCTCAAGGAGCTGGTGTCCCTGACGGACCACGAGAGCGAGGAGCACTATCATCTGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010047-'25-34,'25-32,26-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
PF0062115=RhoGEF=FE(18.9=100)
C2:
PF0062115=RhoGEF=FE(31.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTCGAGACCCTGGAGGA
R:
TGATAGTGCTCCTCGCTCTCG
Band lengths:
248-357
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]