GgaEX6031924 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89810981-89812170:+
Coord C1 exon
chr3:89810981-89811064
Coord A exon
chr3:89811153-89811260
Coord C2 exon
chr3:89812072-89812170
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTATTTTATGTTTTTACAGGAC
3' ss Score
10.24
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ATGCTGGTTTCTGAGATTGAAATGAAACAAAGCAAAATAGACGAATGCCAGAAATATGCAGAACAGTACTCAGCTGCTGTGAAG
Seq A exon
GACTACGAGTTGCAGACTATGACTTACAGAGCTATGGTTGATTCCCAACAAAAATCTCCAGTGAAACGACGAAGAATGCAAAGCTCATCAGACTTCATTATTCAAGAG
Seq C2 exon
TTCATGGATTTACGAACTCGTTATACTGCCTTAGTGACTTTGATGACACAGTACATCAAGTTTGCAGGTGACTCTCTGAAAAGGCTGGAGGAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.361 C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTTTCTGAGATTGAAATGA
R:
TCCTCCTCCAGCCTTTTCAGA
Band lengths:
178-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]