MmuEX6023468 @ mm10
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34169164-34180498:+
Coord C1 exon
chr1:34169164-34169321
Coord A exon
chr1:34174115-34174222
Coord C2 exon
chr1:34177796-34180498
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCATTGGTTCTTTCATGCAGGAC
3' ss Score
9.52
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
AGGAGCAAGAGGAATCTGTGTATAATCTTTACATCTCGGAAGTGCGAAACATTCGGCTCCGCCTGGAGAGCTGTGAAGACAGGTTGATTCGGCAGATCCGGACTCCCCTGGAAAGAGATGATTTACATGAAAGCATGCTCAGGATCACGGAGCAGGAG
Seq A exon
GACTATGAGTTGCAAACAATGACCTACAGGGCTATGGTGGAGTCCCAGCAGAAGTCGCCAGTGAAGCGACGGCGGATACAGAGCTCAGCAGACCTCGTTATTCAAGAG
Seq C2 exon
ATGAAAAGGTCTAAAGAGAATTCTGAGCACGGGGCGTATTCAGATCTACTGCAGCGTCAGAGAGCAACCATGGTTGAGAATAGCAAACTTACCGGGAAGATCAGTGAACTGGAAACAATGGTGGCTGAGCTAAAGAAACAGAAATCCCGGGTCGAGGAGGAGCTTCCGAAAGTTAAGGAGGCCGCCGAAAATGAACTGAGGAAGCAACAGAGGAACGTGGAAGACATCGCCCTGCAGAAGCTGAGGGCCGAGAGCGAGGCCAAGCAGTACCGCCGTGAGCTGGAGACGATCGTGAGGGAGAAGGAAGCTGCCGAGCGGGAGCTGGAGCGGGTGAGGCAGCTCACGGCGGAGGCGGAAGCTCGGCGAGCCGCGGTGGAGGAGAACCTCCGCAACTTCCGGAGCCAGCTGCAGGAAAACACCTTCACCAGGCAGACGCTGGAAGATCATCTGCGGAGGAAAGACTCGAGCCTCAGTGATCTGGAACAGCAGAAACGGGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131_MULTIEX2-6/8=C1-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.295 C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACTCCCCTGGAAAGAGAT
R:
CATTTTCGGCGGCCTCCTTAA
Band lengths:
253-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types