MmuEX6023468 @ mm9
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34229847-34231640:+
Coord C1 exon
chr1:34229847-34229930
Coord A exon
chr1:34230960-34231067
Coord C2 exon
chr1:34231542-34231640
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCATTGGTTCTTTCATGCAGGAC
3' ss Score
9.52
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
ATGCTGGTGTCTGAAATAGAGGTGAAGCAGAGCAAAATGGACGAGTGTCAGAAATACTCAGAGCAGTACTCGGCTGCCGTCAAG
Seq A exon
GACTATGAGTTGCAAACAATGACCTACAGGGCTATGGTGGAGTCCCAGCAGAAGTCGCCAGTGAAGCGACGGCGGATACAGAGCTCAGCAGACCTCGTTATTCAAGAG
Seq C2 exon
TTCATGGACCTACGGACACGGTACACTGCCCTGGTCACTCTTATGACGCAGTATATTAAATTTGCTGGTGATTCGTTGAAAAGGCTGGAAGAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'53-47,'53-46,54-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.278 C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTGTCTGAAATAGAGGTG
R:
TCCTCCTCTTCCAGCCTTTTCA
Band lengths:
181-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: