GgaEX6032066 @ galGal3
Exon Skipping
Gene
ENSGALG00000016341 | CSMD1
Description
NA
Coordinates
chr3:92806719-92819293:+
Coord C1 exon
chr3:92806719-92806888
Coord A exon
chr3:92813483-92813639
Coord C2 exon
chr3:92819102-92819293
Length
157 bp
Sequences
Splice sites
3' ss Seq
TATTATTTTGCTTCTACAAGGTG
3' ss Score
5.89
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTGAATGTGGAGCAACTGTCTCTGGAAATGAAGGAACATTGTTGTCTCCAAATTTTCCATCTAACTATGACAACAACCATGAATGTATCTATAAAATTGAAACAGAGGCTGGAAAAGGGATCCATCTTAGAGCAAGGAGTTTTCAGCTGCACGAGGGAGACATTATTAAG
Seq A exon
GTGTATGATGGAAAAGACAGTTCTTCTCGTTCTCTGGGTGCCTTCACCAAGAATGAAATGGTGGGAGTTATCCTTAACAGCACCTCTAACCACCTGTGGATAGAGTTTAATACCAATGGATCTGATACTGACCAAGGATTTCAGCTCACTTATACAA
Seq C2 exon
GTTTTGACCTAGTCAAGTGTGAAGATCCTGGCATACCGAATTATGGCTACAAGATCCGAGATGAAGGACATTTCATAGACACTGTCATTTTATACAGCTGTAATCCTGGCTATACAATGCATGGCAGTGGCATTATGACTTGCTTAAGTGGAGATAGGAGAGTCTGGGACAAACCCCTGCCTACTTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016341-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(50.9=94.7)
A:
PF0043115=CUB=PD(47.2=94.3)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCTGGAAAAGGGATCCA
R:
CAAGTAGGCAGGGGTTTGTCC
Band lengths:
254-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]