MmuEX6034677 @ mm10
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:16158117-16190092:-
Coord C1 exon
chr8:16189923-16190092
Coord A exon
chr8:16185177-16185333
Coord C2 exon
chr8:16158117-16158308
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTCTACTTCCACTAGGTT
3' ss Score
8.39
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
CTGAATGTGGAGCAAGCGTCAAAGGAAATGAAGGAACATTACTCTCTCCAAATTTCCCATCCCATTATGATAATAACCATGAGTGTATCTATAAAATAGAAACAGAAGCCGGGAAGGGGATCCATCTCAGAGCTCGAACCTTCCAGCTCTTCGAAGGAGACACTCTAAAG
Seq A exon
GTTTACGATGGAAAGGACAGCTCCTCAAGGTCACTGGGTGTCTTCACAAGGAGCGAATTCATGGGGCTGGTGCTCAACAGCACCTCCAACCACCTGAGGCTGGAGTTCAACACCAACGGGTCGGACACCGCCCAAGGCTTCCAGCTCACCTACACCA
Seq C2 exon
GTTTTGACCTAGTGAAATGTGAGGATCCAGGCATCCCTAACTATGGCTACAGGATCCGTGATGATGGCCACTTCACAGACACTGTAGTTCTCTACAGCTGCAACCCGGGCTACGCAATGCATGGCAGCAGTACCCTGACCTGCTTGAGTGGGGACCGCAGGGTGTGGGACAAACCTATGCCTTCCTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'44-50,'44-47,45-50=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(50.9=94.7)
A:
PF0043115=CUB=PD(47.2=94.3)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTGGAGCAAGCGTCAA
R:
TGTGAAGTGGCCATCATCACG
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types