GgaEX6034396 @ galGal3
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
NA
Coordinates
chr4:38928274-38934039:+
Coord C1 exon
chr4:38928274-38928309
Coord A exon
chr4:38929145-38929198
Coord C2 exon
chr4:38933986-38934039
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCTTGGCTTCCCTTCACAGGGT
3' ss Score
10.67
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGAGCATCTGGCTTAGACGGAAAGCCAGGACCCCGG
Seq A exon
GGTGTAGATGGCCCAGTTGGTCCCCACGGCCCTGCAGGCCCTAAAGGAGACAGA
Seq C2 exon
GGTGAAAAGGGAACTGTAGGTGACCCTGGACCCAGAGGACCCTATGGCTTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'29-32,'29-31,30-32=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.4=100),PF0139113=Collagen=FE(12.8=100)
A:
PF0139113=Collagen=PD(4.9=22.2),PF0139113=Collagen=FE(21.2=100)
C2:
PF0139113=Collagen=FE(21.2=100),PF0139113=Collagen=PU(11.8=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGGCTTAGACGGAAAGC
R:
CAAGCCATAGGGTCCTCTGGG
Band lengths:
84-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]