GgaEX6034400 @ galGal3
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
NA
Coordinates
chr4:38912579-38915319:+
Coord C1 exon
chr4:38912579-38912623
Coord A exon
chr4:38914657-38914701
Coord C2 exon
chr4:38915242-38915319
Length
45 bp
Sequences
Splice sites
3' ss Seq
CAAATATCCCTTTTATCTAGGGT
3' ss Score
6.94
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGGAGAACAGGTGAACCTGGATCTAGAGGCCCCAAAGGGTCAAAG
Seq A exon
GGTGATACAGGTGACAGAGGTGACACAGGATCTGCAGGTCCACGG
Seq C2 exon
GGGCCACCTGGACAGAAGGGTGATCAAGGTGCTACAGAGATAATTGATTATAATGGCAATATTCATGAAGCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'17-21,'17-20,18-21=AN
Average complexity
A_C1
Mappability confidence:
75%=50=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.3=100)
A:
PF0139113=Collagen=FE(23.3=100)
C2:
PF0139113=Collagen=PD(20.0=46.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCTGGATCTAGAGGCCC
R:
TGAAGAGCTTCATGAATATTGCCA
Band lengths:
111-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]