GgaEX6034400 @ galGal4
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:37062382-37065122:+
Coord C1 exon
chr4:37062382-37062426
Coord A exon
chr4:37064460-37064504
Coord C2 exon
chr4:37065045-37065122
Length
45 bp
Sequences
Splice sites
3' ss Seq
CAAATATCCCTTTTATCTAGGGT
3' ss Score
6.94
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGGAGAACAGGTGAACCTGGATCTAGAGGCCCCAAAGGGTCAAAG
Seq A exon
GGTGATACAGGTGACAGAGGTGACACAGGATCTGCAGGTCCACGG
Seq C2 exon
GGGCCACCTGGACAGAAGGGTGATCAAGGTGCTACAGAGATAATTGATTATAATGGCAATATTCATGAAGCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'25-24,'25-23,26-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.3=100)
A:
PF0139113=Collagen=FE(23.3=100)
C2:
PF0139113=Collagen=PD(20.0=46.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCTGGATCTAGAGGCCC
R:
TGAAGAGCTTCATGAATATTGCCA
Band lengths:
111-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]