GgaEX6036056 @ galGal3
Exon Skipping
Gene
ENSGALG00000015623 | E1BZN8_CHICK
Description
NA
Coordinates
chr4:84954207-84957486:-
Coord C1 exon
chr4:84957312-84957486
Coord A exon
chr4:84955136-84955221
Coord C2 exon
chr4:84954207-84954447
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTGTGAATTCATTAGAAA
3' ss Score
3.92
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TTCCTAATCATCACTGCTATCGTGGCAATGGCACTGAGTACAGAGGTACAGCCAATACGACCATTTCTGGACATAGCTGCTTGCCTTGGAATTCAGACTTACTCTACCGGGAGCTTCATGTTGACAGCGTTGAGAAAGCAGTACAGCTAGGCTTGGGGCCCTTCCCTTACTGCAG
Seq A exon
AAATCCAGATGAAGATGAGAAGCCATGGTGTTACATCATGAAGGACAACAGTTTGTCTTGGGAATACTGTAACATTCCATCTTGTG
Seq C2 exon
CAAGCAGGGAAAGGAGGCCACCAGTTCCAGAAGATATTGACACTTTTGCAGTTGCCAGAAGGCCATGTGGGAGAAGACATAAAAAAAGAAGTTTTGTGAGACCTAGGATTATTGGAGGTTCTTCATCTTTGCCTGGATCTCATCCCTGGACAGCAGCTATATATATTGGAGAAAGTTTCTGTGCTGGATCTCTTATTCAGACTTGCTGGGTTGTGTCAGCAGCACACTGCTTTGCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(64.6=89.8)
A:
PF0005113=Kringle=PD(34.1=93.3)
C2:
PF0008921=Trypsin=PU(18.8=54.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTTGCCTTGGAATTCA
R:
TCTTCTCCCACATGGCCTTCT
Band lengths:
178-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]