MmuEX6017190 @ mm10
Exon Skipping
Gene
ENSMUSG00000029102 | Hgfac
Description
hepatocyte growth factor activator [Source:MGI Symbol;Acc:MGI:1859281]
Coordinates
chr5:35044357-35045506:+
Coord C1 exon
chr5:35044357-35044531
Coord A exon
chr5:35044764-35044849
Coord C2 exon
chr5:35045251-35045506
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACTCCCTTGTCTGCTTCCAGGAA
3' ss Score
10.91
5' ss Seq
GTGGTGCGG
5' ss Score
3.64
Exon sequences
Seq C1 exon
TTCCCACAGAGCACTGCTTCCTGGGAAATGGTACAGAGTACCGAGGCGTGGCCAGCACCGCTGCCTCGGGCCTGAGCTGCCTGGCCTGGAATTCTGACCTGCTCTACCAGGAGCTGCACGTGGACTCAGTGGCTGCTGCTGTCCTGCTTGGCCTGGGCCCTCACGCTTACTGCCG
Seq A exon
GAACCCAGACAAGGATGAGAGGCCTTGGTGCTATGTGGTGAAGGACAACGCACTGTCGTGGGAGTATTGCCGCCTGACAGCCTGTG
Seq C2 exon
AATCCCTGGCCAGAGTCCACTCCCAAACCCCGGAGATCCTAGCAGCCCTGCCCGAGTCAGCCCCGGCTGTGCGTCCTACCTGTGGCAAGAGGCACAAGAAGAGGACGTTCTTGAGACCACGCATCATCGGGGGCTCATCATCTTTGCCTGGCTCACACCCCTGGCTGGCTGCCATCTACATTGGGAATAGCTTCTGTGCCGGGAGCCTTGTCCATACCTGCTGGGTAGTGTCTGCAGCCCACTGCTTCGCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029102-'11-21,'11-18,14-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(64.6=89.8)
A:
PF0005113=Kringle=PD(34.1=93.3)
C2:
PF0005113=Kringle=PD(0.1=0.0),PF0008921=Trypsin=PU(36.4=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACCAGGAGCTGCACGT
R:
TTCTTGTGCCTCTTGCCACAG
Band lengths:
174-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types