DreEX6070063 @ danRer10
Exon Skipping
Gene
ENSDARG00000057498 | habp2
Description
hyaluronan binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4721]
Coordinates
chr12:31601911-31602959:+
Coord C1 exon
chr12:31601911-31602064
Coord A exon
chr12:31602525-31602619
Coord C2 exon
chr12:31602728-31602959
Length
95 bp
Sequences
Splice sites
3' ss Seq
CACTATCGTTATTGTTTAAGGAA
3' ss Score
5.88
5' ss Seq
CAGGCATAG
5' ss Score
0.97
Exon sequences
Seq C1 exon
GTTCAAACGATTGCTATGAAGGGAATGGGGAATCATACAGAGGCAATGTCAGTGAAACAATAGAAGAAATTGAGTGTTTACCCTGGAACCACAATCTTATTCCTTACAAAGAGTTTGAAGGGAATGAGAGCATTGGAGAACACAATTACTGCAG
Seq A exon
GAATCCAGATGGAGACCGAGAACCTTGGTGCTTTGTAAAGGAAAAGGGAAAGCTTCAGTGGAACTACTGCAATGTCAAGCCATGCTCTGAAACAG
Seq C2 exon
AACCAGAAAAACCCTTAACTACCCCTACAAAACTGGAGTTTTCAGACTGTGGAAAGGCCGCATTTAGCATGATAGCGCCAAGAATATTTGGTGGGAGGAAGTCCCTACCCGAGGCCCATCCCTGGCAGGCCTCATTTCAGGTGCGTCCCAAGGGCTCGAATGCAACCTTTGAGCATAACTGTGGAGGAACCCTGATTGACTCCTGCTGGATCCTGACGGCAGCCCACTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057498-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(61.8=90.4)
A:
PF0005113=Kringle=PD(36.8=84.8)
C2:
PF0008921=Trypsin=PU(20.7=62.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGGCAATGTCAGTGAAACA
R:
CGGCCTTTCCACAGTCTGAAA
Band lengths:
178-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]