MmuEX6033751 @ mm9
Exon Skipping
Gene
ENSMUSG00000025075 | Habp2
Description
hyaluronic acid binding protein 2 [Source:MGI Symbol;Acc:MGI:1196378]
Coordinates
chr19:56386161-56388720:+
Coord C1 exon
chr19:56386161-56386332
Coord A exon
chr19:56387359-56387456
Coord C2 exon
chr19:56388465-56388720
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACTTAAATTTTGTGTTTTAGAAA
3' ss Score
9.68
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAAGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCAG
Seq A exon
AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG
Seq C2 exon
ACACCCCTAACCCAGTGGAAAGCCTTCTGGAGCCTGTGATGGAGCTGCCAGGGTTCGAGTCCTGCGGGAAGACGGAGGTAGCTGAACACGCAGTCAAGCGTATCTACGGGGGCTTTAAGAGCACAGCAGGCAAGCACCCGTGGCAGGTGTCCCTGCAGACCTCACTGCCGTTGACCACCTCCATGCCCCAAGGCCACTTCTGTGGGGGCGCCCTGATCCACCCCTGCTGGGTGCTCACTGCAGCCCACTGTACCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025075-'7-16,'7-13,9-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=0.006 C2=0.013
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(63.9=91.4)
A:
PF0005113=Kringle=PD(34.9=85.3)
C2:
PF0008921=Trypsin=PU(21.5=59.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTACTCTTACCGAGGCAA
R:
GCTCCAGAAGGCTTTCCACTG
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: