RnoEX6007840 @ rn6
Exon Skipping
Gene
ENSRNOG00000016659 | Habp2
Description
hyaluronan binding protein 2 [Source:RGD Symbol;Acc:1302979]
Coordinates
chr1:277095617-277098160:+
Coord C1 exon
chr1:277095617-277095788
Coord A exon
chr1:277096800-277096897
Coord C2 exon
chr1:277097905-277098160
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACTTTAATTTTGTGTTTTAGAAA
3' ss Score
10.64
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GTCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAGGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGAATTACAACATGTTTATGGAGGATGCCGAGACCCATGGGATCGCAGATCACAACTTCTGCAG
Seq A exon
AAACCCAGATGGAGACCACAAGCCGTGGTGTTTCGTTAAGGTGAACAGTGAGAAGGTGAAATGGGAGTATTGTAATGTCGAGGTCTGCCCAGAGTCCG
Seq C2 exon
ATGCTGCTAACCCATTGGGCAGCCTTCAGGAACCTGTGATGGAGCTGCCAGGATTCGACTCCTGCGGGAAGACAGAGATGACTGAACACGCGGTCAAGCGCATCTACGGGGGCTTTAAGAGCACAGCGGGCAAGCACCCGTGGCAGGTGTCCCTGCAGACCTCATTGCCGCTGACCACCTCCATGCCCCAAGGCCACTTCTGTGGGGGTTCCCTGATTCACCCTTGCTGGGTGCTCACTGCAGCCCACTGTACCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016659-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(63.9=91.4)
A:
PF0005113=Kringle=PD(34.9=85.3)
C2:
PF0008921=Trypsin=PU(21.5=59.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAGTCAACCAGAACCCA
R:
GAATCCTGGCAGCTCCATCAC
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]