GgaEX6041014 @ galGal3
Exon Skipping
Gene
ENSGALG00000008905 | F1NEB3_CHICK
Description
NA
Coordinates
chr6:28908015-28908996:+
Coord C1 exon
chr6:28908015-28908186
Coord A exon
chr6:28908598-28908692
Coord C2 exon
chr6:28908735-28908996
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTCTCAACCATTCCTTTCAGAAA
3' ss Score
8.03
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
AACCAGATGATTGTTATGAAGAGGACTCCTTTTATTACAGAGGAAGAGTGAACCAAGCACAGAGTGGCAGGACTTGCCTGCACTGGAATTCCCACTTGCTCTTGCGCTTCTCTATTAATGCATTTATGGAGGATGCTGAGTCTTATGGGATTGGGGAACATAACTTCTGCAG
Seq A exon
AAATCCTGATGAGGATCAAAAGCCCTGGTGTTTCATTAGAAACAATGGCAAAGTGCAATGGGACTTCTGTGATGTTTCACCATGCTCTGGAACAG
Seq C2 exon
GTAGGATTTCTGCAGTACGTGTTGCTATTTCTTCCAACACAGATGAGGAGAGACAAGAGCAAGAAGATGAAATGTTCAAAACCTGTGGACAACCAGAAAGTCAAAGGGGACTCAGGAGAATCTATGGTGGAACTAAGACTACAGCTGGCAAGCACCCCTGGATGGTATCTCTGCAGAGAAAGTCTTCTAGAAGAGTAACACACTTCTGTGGTGGAGCGCTAATTAAATCATGCTGGGTTCTTACTGCTGCACACTGTGTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008905-'7-9,'7-8,8-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.330
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(64.6=91.4)
A:
PF0005113=Kringle=PD(34.1=84.8)
C2:
PF0008921=Trypsin=PU(19.9=53.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTGCTCTTGCGCTTCTCT
R:
ACTTTCTGGTTGTCCACAGGT
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]