HsaEX6083367 @ hg38
Exon Skipping
Gene
ENSG00000109758 | HGFAC
Description
HGF activator [Source:HGNC Symbol;Acc:HGNC:4894]
Coordinates
chr4:3444819-3445896:+
Coord C1 exon
chr4:3444819-3444993
Coord A exon
chr4:3445265-3445350
Coord C2 exon
chr4:3445876-3445896
Length
86 bp
Sequences
Splice sites
3' ss Seq
CCCCCACTTATGCACCGCAGGAA
3' ss Score
7.49
5' ss Seq
GCGGTGCGC
5' ss Score
6.63
Exon sequences
Seq C1 exon
AGCCTGATGAGCGCTGCTTCTTGGGGAACGGCACTGGGTACCGTGGCGTGGCCAGCACCTCAGCCTCGGGCCTCAGCTGCCTGGCCTGGAACTCCGATCTGCTCTACCAGGAGCTGCACGTGGACTCCGTGGGCGCCGCGGCCCTGCTGGGCCTGGGCCCCCATGCCTACTGCCG
Seq A exon
GAATCCGGACAATGACGAGAGGCCCTGGTGCTACGTGGTGAAGGACAGCGCGCTCTCCTGGGAGTACTGCCGCCTGGAGGCCTGCG
Seq C2 exon
ATTTGGAAACTGAGGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109758-'7-13,'7-12,9-13=AN
Average complexity
A_C2
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(64.6=89.8)
A:
PF0005113=Kringle=PD(34.1=93.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTGGGGAACGGCACTG
R:
CTCTGCCCTCAGTTTCCAAAT
Band lengths:
180-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains