GgaEX6036354 @ galGal3
Exon Skipping
Gene
ENSGALG00000013254 | LOXL3
Description
NA
Coordinates
chr4_random:109216-112771:+
Coord C1 exon
chr4_random:109216-109427
Coord A exon
chr4_random:112070-112289
Coord C2 exon
chr4_random:112591-112771
Length
220 bp
Sequences
Splice sites
3' ss Seq
GCTCTGGTCTCTCCTTGCAGGCT
3' ss Score
10.86
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACGGAGCAGAGCCACGTGGAGGAGGTCCGTCTGCGCGCGGTGGTGTCGGGGGCACAGCGGCGGCTGCCAGTGACAGAGGGCATCGTGGAGGTGCGCTACAAGGATGGCTGGGCACAGATCTGCGATGAGGGCTGGGACAGCAAGAACAGCCACGTCATCTGCGGCATGATGGGCTTCCCCACTGAGAAGAAGGTGAACAGGAACTTCTACAA
Seq A exon
GCTGTTTGCGGAGCGGCAGCAGCTCAACTACCGCCTGCACTCAGTGTCCTGCACAGGGACAGAGGTGCACATCTCCATGTGCACGTTCCAGTTCTACCGGGGCAACTCCTCAGCAGCCTGCAGCACTGGCATGCCCGCTGTTGTCAGCTGCCTGCCCGGGCCCCTCTTTGCTACCAGCAGCACCCAGAAGAAGAAGCAGCGCCAGCAGCAGCAGAGCCAG
Seq C2 exon
CCGCGGATCCGGCTGAAGGGCGGTGCCAAGGCCGGGGAGGGCCGTGTCGAGGTGCTGAAGAACAATGAGTGGGGCACAATCTGCGATGACCGCTGGAATCTGCTGTCTGCCAGTGTGGTGTGCCGAGAGCTGGGCTTTGGCAGTGCCAAGGAAGCCCTCACTGGGGCACGCATGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013254-'2-5,'2-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.176 C2=0.131
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(50.0=73.2)
A:
PF0053013=SRCR=PD(49.0=68.9)
C2:
PF0053013=SRCR=PU(56.1=90.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACAGAGGGCATCGTG
R:
GTGAGGGCTTCCTTGGCAC
Band lengths:
306-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]