RnoEX6014006 @ rn6
Exon Skipping
Gene
ENSRNOG00000061373 | Loxl3
Description
lysyl oxidase-like 3 [Source:RGD Symbol;Acc:1311011]
Coordinates
chr4:113871509-113881228:+
Coord C1 exon
chr4:113871509-113871723
Coord A exon
chr4:113880444-113880663
Coord C2 exon
chr4:113881048-113881228
Length
220 bp
Sequences
Splice sites
3' ss Seq
CCTCACTCCTGTCCCCATAGGAT
3' ss Score
11.07
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTGGATCATCAGCTCCAAGTGGAGGAAGTGCGACTCCGACCAGCTGTGGAGTGGGGCAGGCGACCCCTGCCTGTGACTGAGGGCCTGGTTGAAGTCAGGCTTCCTGAAGGCTGGTCGCAAGTGTGTGACAAAGGCTGGAGTGCCCACAACAGCCACGTAGTCTGCGGTATGCTGGGTTTCCCTGGAGAAAAGAGAGTCAACATGGCCTTCTACAG
Seq A exon
GATGCTGGCCCAGAAGAAGCAACACTCCTTTGGTCTACACAGCGTGGCATGTGTGGGCACAGAAGCCCACCTCTCCCTTTGCTCTCTGGAGTTCTATCGTGCCAATGACACCACCAGATGTGCTGGTGGGAGCCCTGCAGTGGTGAGCTGTATGCTGGGCCCTCTTTATGCCACCTCTACTGGTCAGAAGAAGCAGCAACATTCTAAGCCTCAAGGGGAG
Seq C2 exon
GCCAGTGTGCGTCTAAAGGGCGGTGCCCACCCTGGAGAAGGCCGAGTGGAAGTCCTGAAGGCTGGCACATGGGGAACAGTCTGTGACCGAAAGTGGGATCTGCAGGCAGCCAGTGTAGTGTGTCGAGAGCTGGGCTTTGGCACTGCCCGAGAAGCCCTGAGTGGTGCCCGCATGGGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061373-'5-9,'5-8,8-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.186
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(48.5=68.1)
A:
PF0053013=SRCR=PD(50.5=68.9)
C2:
PF0053013=SRCR=PU(56.1=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGGAGGAAGTGCGACTC
R:
CTGCAGATCCCACTTTCGGTC
Band lengths:
305-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]