GgaEX6036976 @ galGal4
Exon Skipping
Gene
ENSGALG00000005927 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr5:9138083-9140584:+
Coord C1 exon
chr5:9138083-9138267
Coord A exon
chr5:9138918-9139027
Coord C2 exon
chr5:9140515-9140584
Length
110 bp
Sequences
Splice sites
3' ss Seq
CAATTCTTTCCCCCCCACAGCTA
3' ss Score
9.22
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
CTCATACCCAGCGCCTAGTGCATATCCAGTCAATGCTGAAGAGAGCACCGAGTTATCGAACCCTGGAACTGGAGCTCATTGAATGGCAGGAACGGGAGTTATTTGAGTATTTTGTGGTAGTATCACTGAAAAAGAAGCCCTCTAAAAACACTTACCTCCCAGAAGTGACCTATCAGTTTCCCAAG
Seq A exon
CTAGAAAGGCCAACCAAGCAAATGCGTGAAGCAGAGGAGCGTCTCAAGGCCATCCCTCAGTTCTGCTTTCCTGATGCTAAAGACTGGCTCCCTGTCTCTGAATACAACAG
Seq C2 exon
TGAGACTTTCTCTTTCATGCTGACTGGGGAAGATGGGAGCCGGAGGTTTGGCTATTGCAGGAGGCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927-'25-27,'25-25,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(12.9=14.5)
A:
PF0345613=uDENN=FE(51.4=100)
C2:
PF0345613=uDENN=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCCTAGTGCATATCCAG
R:
AGCCTCCTGCAATAGCCAAAC
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]