RnoEX6004257 @ rn6
Exon Skipping
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174151627-174153161:-
Coord C1 exon
chr1:174152977-174153161
Coord A exon
chr1:174152290-174152399
Coord C2 exon
chr1:174151627-174151696
Length
110 bp
Sequences
Splice sites
3' ss Seq
CATATTCCTCTTCCTGGCAGCTG
3' ss Score
9.14
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCCACACACAGCGCTTGGTCCACATCCAGTCAATGCTGAAGCGCGCACCCAGCTATCGGACACTGGAGCTGGAGCTGCTCGAATGGCAGGAGCGGGAGCTCTTTGAATACTTTGTGGTTGTGTCCCTCAAGAAGAAGCCATCTCGTAACACCTACCTCCCTGAAGTCTCCTACCAGTTTCCCAAG
Seq A exon
CTGGACCGACCCACCAAGCAGATGCGGGAGGCAGAAGAAAGGCTCAAAGCTATCCCCCAGTTTTGCTTTCCAGATGCCAAGGACTGGCTCCCTGTGTCAGAATACAGCAG
Seq C2 exon
TGAAACCTTTTCTTTCATGCTGACTGGGGAAGACGGTAGCAGACGCTTTGGCTATTGTAGGCGCTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934-'32-24,'32-23,34-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.092 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(12.9=14.5)
A:
PF0345613=uDENN=FE(51.4=100)
C2:
PF0345613=uDENN=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGTCCACATCCAGTCAA
R:
CAGTAAGCGCCTACAATAGCCA
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]