HsaEX0062006 @ hg38
Exon Skipping
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8707777-8712735:-
Coord C1 exon
chr11:8712551-8712735
Coord A exon
chr11:8711126-8711231
Coord C2 exon
chr11:8707777-8707854
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGGTTCCTTCTTCCCTGCAGCTG
3' ss Score
10.75
5' ss Seq
ATAGCAGGT
5' ss Score
-3.68
Exon sequences
Seq C1 exon
CCCACACACAGCGCCTGGTCCACATCCAGTCGATGCTGAAGCGCGCCCCCAGCTATCGCACGCTGGAGCTGGAGCTGCTGGAGTGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTGGTGTCCCTCAAGAAGAAGCCATCGCGAAACACCTACCTCCCCGAAGTCTCCTACCAGTTTCCCAAG
Seq A exon
CTGGACCGACCCACCAAGCAGATGCGAGAGGCAGAGGAAAGGCTCAAAGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTTCCTGTGTCAGAGTATA
Seq C2 exon
CCAAGTGGGAAAGGGCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444_MULTIEX1-6/17=4-9
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.082 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(12.9=14.5)
A:
PF0345613=uDENN=FE(70.0=100)
C2:
PF0214116=DENN=PU(10.3=73.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCCACATCCAGTCGAT
R:
AAAACAAGCCGAAGCAGCCAA
Band lengths:
244-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development