GgaEX6037740 @ galGal3
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25817049-25817658:-
Coord C1 exon
chr5:25817596-25817658
Coord A exon
chr5:25817273-25817346
Coord C2 exon
chr5:25817049-25817160
Length
74 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTTGTTTGTCTCCAGTGT
3' ss Score
9.48
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACGGCTTTCTCCGACTTCCTCACAGGGAGCTCCAAAGATTTAGCGAAGCACGTCAAGTTGGTT
Seq A exon
TGTGATAGCGTGGACCTGACCCCCAAGATCCAGGACCTGAAGCCACAGTGTTTGGTCTTCCTGAACATCCCCAG
Seq C2 exon
ATACTGTGCAGGCACAATGCCCTGGGGCAACCCTGGAGAGCACCACGACTTCGAGCCGCAGCGCCATGATGATGGCTGCATTGAAGTCATTGGCTTCACCATGACATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'20-20,'20-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.211
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
PF0060914=DAGK_acc=FE(15.2=100)
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCGACTTCCTCACAGGG
R:
CAGGGATGTCATGGTGAAGCC
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]