DreEX6006487 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38823597-38825959:+
Coord C1 exon
chr7:38823597-38823659
Coord A exon
chr7:38823963-38824036
Coord C2 exon
chr7:38825848-38825959
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTCATTCTTTGTAGTGT
3' ss Score
9.12
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
ACAGCGTTTTCTGATTTCTTGATGGGCAGCTCCAAAGACCTGGCTAAGCACATCAAAGTAGTC
Seq A exon
TGTGACGGCACAGATTTAACCTCAAAGGTCCAGGATTTGAAGCTGCAATGCCTGGTCTTCCTAAATATCCCCAG
Seq C2 exon
GTACTGTGCGGGCACAATGCCATGGGGCAATCCGAGTGAGCATCATGACTTTGAGCCTCAGCGTCATGATGATGGCTGCATTGAGGTTATTGGATTCACAATGACATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-'26-23,'26-22,27-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.211
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
PF0060914=DAGK_acc=FE(15.2=100)
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGATTTCTTGATGGGCAGCT
R:
CAGTGATGTCATTGTGAATCCAA
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]