RnoEX0027559 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80849144-80849563:-
Coord C1 exon
chr3:80849501-80849563
Coord A exon
chr3:80849334-80849407
Coord C2 exon
chr3:80849144-80849255
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGTTCCTGTGTCCAGTGT
3' ss Score
8.38
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACGGCCTTCTCTGACTTCCTGATGGGCAGCTCCAAGGACTTAGCCAAGCACATCCGAGTAGTG
Seq A exon
TGTGACGGAATGGACCTAACCCCCAAGATTCAGGACCTGAAACCGCAGTGCATAGTCTTTCTGAATATCCCCAG
Seq C2 exon
GTACTGTGCAGGCACCATGCCCTGGGGCCACCCTGGGGAGCACCATGACTTCGAGCCCCAGAGGCACGATGATGGCTACCTCGAGGTCATCGGCTTCACCATGACATCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-'37-45,'37-43,39-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.263
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
PF0060914=DAGK_acc=FE(15.2=100)
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGACTTCCTGATGGGCA
R:
AAGGATGTCATGGTGAAGCCG
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]