BtaEX6028846 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:102057270-102063746:-
Coord C1 exon
chr4:102063684-102063746
Coord A exon
chr4:102059414-102059487
Coord C2 exon
chr4:102057270-102057381
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTTGATTGTTGCAGTGT
3' ss Score
7.54
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCAGCTTTTTCTGATTTCCTACAGAGAAGCTCTAGAGATTTATCCAAACATGTTAAAGTTGTC
Seq A exon
TGTGATGGGACCGATCTTACCCCAAAGATCCAGGAACTGAAGTTCCAGTGTATAGTATTTTTAAATATACCCAG
Seq C2 exon
ATATTGTGCTGGCACAATGCCCTGGGGGAACCCAGGAGATCACCATGACTTTGAACCTCAGCGTCATGATGATGGTTATATTGAAGTCATTGGGTTCACCATGGCATCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.224
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
PF0060914=DAGK_acc=FE(15.2=100)
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTTTTTCTGATTTCCTACAGA
R:
CAAAGATGCCATGGTGAACCC
Band lengths:
175-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]