Special

GgaEX0019479 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr1:59635968-59637906:+
Coord C1 exon
chr1:59635968-59636030
Coord A exon
chr1:59636252-59636325
Coord C2 exon
chr1:59637795-59637906
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTGTCACTTTGGCTTTGTAGTGT
3' ss Score
7.04
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCAGCCTTTTCAGACTTCTTGCAAAGAAGCTCAAGAGATTTATCCAAGCACGTTAAAGTTGTG
Seq A exon
TGTGATGGTACAGACCTGACTCCAAAGATCCAGGAGCTGAAGTTCCAGTGTATAGTGTTTTTAAACATTCCCAG
Seq C2 exon
GTATTGTGCTGGCACAATGCCCTGGGGAAACCCTGGAGATCACAGAGACTTTGAACCTCAGCGCCATGATGATGGCTACATTGAAGTCATTGGGTTCACCATGGCCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'19-20,'19-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.219
Domain overlap (PFAM):

C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
PF0060914=DAGK_acc=FE(15.2=100)
C2:
PF0060914=DAGK_acc=FE(23.4=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCTTTTCAGACTTCTTGC
R:
CAGTGAGGCCATGGTGAACC
Band lengths:
175-249
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]