MmuEX6003727 @ mm10
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:37012871-37019978:-
Coord C1 exon
chr6:37019916-37019978
Coord A exon
chr6:37016605-37016678
Coord C2 exon
chr6:37012871-37012982
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTTTGGTTGCTGCAGTGT
3' ss Score
6.58
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCAGCCTTTTCTGATTTCCTACAAAGAAGTTCTAGAGATCTATCCAAACACGTCAAAGTTGTC
Seq A exon
TGTGATGGGACAGACCTCACCCCAAAGATCCAGGACCTGAAGTTCCAGTGTATAGTATTTTTAAATATTCCCAG
Seq C2 exon
ATATTGTGCTGGCACAATGCCTTGGGGAAACCCTGGAGATCATCATGACTTTGAACCCCAACGTCATGATGACGGCTACATTGAAGTCATTGGATTCACTATGGCCTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-'40-37,'40-36,41-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.199
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
PF0060914=DAGK_acc=FE(15.2=100)
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCTTTTCTGATTTCCTACA
R:
AGGCCATAGTGAATCCAATGACT
Band lengths:
170-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types