RnoEX6013171 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64546760-64550976:-
Coord C1 exon
chr4:64550914-64550976
Coord A exon
chr4:64548412-64548485
Coord C2 exon
chr4:64546760-64546871
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTTTGGTTGCTGCAGTGT
3' ss Score
6.58
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCAGCCTTTTCTGATTTCCTACAGAGAAGTTCTAGAGATCTATCCAAGCACGTCAAAGTTGTT
Seq A exon
TGTGATGGGACAGACCTCACTCCAAAGATCCAGGACCTGAAGTTCCAGTGTATAGTATTTTTAAATATTCCCAG
Seq C2 exon
ATATTGTGCTGGCACAATGCCTTGGGGAAACCCTGGAGATCATCATGACTTTGAACCCCAGCGTCATGATGATGGTTACATTGAAGTCATCGGATTCACTATGGCCTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'29-31,'29-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
PF0060914=DAGK_acc=FE(15.2=100)
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCTTTTCTGATTTCCTACA
R:
AGAGGCCATAGTGAATCCGATGA
Band lengths:
172-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]