GgaEX0019479 @ galGal4
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57709516-57711454:+
Coord C1 exon
chr1:57709516-57709578
Coord A exon
chr1:57709800-57709873
Coord C2 exon
chr1:57711343-57711454
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTGTCACTTTGGCTTTGTAGTGT
3' ss Score
7.04
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCAGCCTTTTCAGACTTCTTGCAAAGAAGCTCAAGAGATTTATCCAAGCACGTTAAAGTTGTG
Seq A exon
TGTGATGGTACAGACCTGACTCCAAAGATCCAGGAGCTGAAGTTCCAGTGTATAGTGTTTTTAAACATTCCCAG
Seq C2 exon
GTATTGTGCTGGCACAATGCCCTGGGGAAACCCTGGAGATCACAGAGACTTTGAACCTCAGCGCCATGATGATGGCTACATTGAAGTCATTGGGTTCACCATGGCCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.217
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
PF0060914=DAGK_acc=FE(15.2=100)
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCTTTTCAGACTTCTTGC
R:
CAGTGAGGCCATGGTGAACC
Band lengths:
175-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]