GgaEX6040800 @ galGal4
Exon Skipping
Gene
ENSGALG00000026957 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr6:22630365-22631355:-
Coord C1 exon
chr6:22631257-22631355
Coord A exon
chr6:22630686-22630779
Coord C2 exon
chr6:22630365-22630478
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGATGTCCCTGGTCCTGCAGGAT
3' ss Score
9.02
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ACCGAGTGCTTCAACCACGTGCGGTTCCTGCAGAGGCTGAACACCACGCACCTCTACGCCTGTGGCACCTATGCCTTCCACCCGCTCTGCGCTTCCATT
Seq A exon
GATGCTGACAGGTTCACACTGCCCTCCCGCTTCGAGGAAGGCAAAGAGAAGTGCCCCTACGACCCCTCCCGCGGCTACACCGGCCTCATTGTGG
Seq C2 exon
ATGGTGGATTGTACACAGCCACACGCTATGAGTTTCGGAGCCTCCCTGACATCCGGAGGAACCTGCACCAGCGGCCGCTGAAGACAGAGGAGTCCCCTCTGCACTGGCTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026957-'3-9,'3-8,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.4=100)
A:
PF0140314=Sema=FE(7.2=100)
C2:
PF0140314=Sema=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACACCACGCACCTCTAC
R:
CATTCAGCCAGTGCAGAGGG
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]