HsaEX0057125 @ hg19
Exon Skipping
Gene
ENSG00000095539 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:10735]
Coordinates
chr10:102737389-102738397:+
Coord C1 exon
chr10:102737389-102737487
Coord A exon
chr10:102738052-102738145
Coord C2 exon
chr10:102738284-102738397
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCTGGTTCCTTGTTCCCTAGGAT
3' ss Score
8.55
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
ACGGAGTGCTTTAACCATGTGCGGTTCCTGCAGCGGCTCAATTCTACCCACCTCTATGCATGTGGGACTCACGCCTTCCAGCCCCTCTGTGCAGCCATT
Seq A exon
GATGCTGAGGCCTTCACCTTGCCAACCAGCTTCGAGGAGGGGAAGGAGAAGTGTCCTTATGACCCAGCCCGTGGCTTCACAGGCCTCATCATTG
Seq C2 exon
ATGGAGGCCTCTACACAGCCACTAGGTATGAATTCCGGAGCATTCCTGACATCCGCCGGAGCCGCCACCCACACTCCCTGAGAACTGAGGAGACACCAATGCATTGGCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539-'6-11,'6-10,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.231
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(27.8=100)
A:
PF0140314=Sema=FE(7.1=100)
C2:
PF0140314=Sema=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTTTAACCATGTGCGGT
R:
TCAGTTCTCAGGGAGTGTGGG
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)