MmuEX6033163 @ mm10
Exon Skipping
Gene
ENSMUSG00000025207 | Sema4g
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:MGI Symbol;Acc:MGI:1347047]
Coordinates
chr19:44996469-44997033:+
Coord C1 exon
chr19:44996469-44996567
Coord A exon
chr19:44996680-44996773
Coord C2 exon
chr19:44996920-44997033
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTGGGACCCTTCTTCTCCAGGAT
3' ss Score
7.34
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
ACCGAGTGTTTCAACCACGTGCGATTTCTACAGCGGCTCAATGCCACCCACTTCTATGCATGTGGGACCCACGCCTTCCAGCCCCTCTGTGCAGCTATT
Seq A exon
GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG
Seq C2 exon
ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025207-'6-30,'6-25,15-30=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.128
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.4=100)
A:
PF0140314=Sema=FE(7.2=100)
C2:
PF0140314=Sema=FE(8.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACGTGCGATTTCTACAGC
R:
GGTGCCTCCTCAGTTCTCAGA
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types