DreEX6070268 @ danRer10
Exon Skipping
Gene
ENSDARG00000088143 | sema4gb
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Gb [Source:ZFIN;Acc:ZDB-GENE-111117-1]
Coordinates
chr12:33754794-33755296:-
Coord C1 exon
chr12:33755198-33755296
Coord A exon
chr12:33754989-33755079
Coord C2 exon
chr12:33754794-33754907
Length
91 bp
Sequences
Splice sites
3' ss Seq
ACATCTGCCTGTTTCATCAGGAT
3' ss Score
9.12
5' ss Seq
TCGGTAAAT
5' ss Score
6.8
Exon sequences
Seq C1 exon
ACTGAATGCTACAATCACGTGCGGTTTCTGGACAGATACAATGACACTCATTTGTACACCTGCGGGACTCACGCCTTCAGACCCCGCTGTGCTTACATA
Seq A exon
GATGTGGCACGTTTTACCTTTGTGCGTTTTGAGGAGGGAAAAGAGAAATGCCCTTATGATCCCACTAAGGGGTACACTGGATTTATTATCG
Seq C2 exon
ATGGCGAGATGTACTCTGCCTCCCAGTATGAATTTCGTAACATCGCTGATATAAGGCGAAACTTTCCCTTCCCCAATTTGAGAATAGATGATTCCCCAACAAGATGGCTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088143-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.2=100)
A:
PF0140314=Sema=FE(7.7=100)
C2:
PF0140314=Sema=PU(11.5=97.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTACAATCACGTGCGGTT
R:
TTGGGGAAGGGAAAGTTTCGC
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]