RnoEX6039316 @ rn6
Exon Skipping
Gene
ENSRNOG00000016254 | Sema4c
Description
semaphorin 4C [Source:RGD Symbol;Acc:1562837]
Coordinates
chr9:43134036-43134572:-
Coord C1 exon
chr9:43134474-43134572
Coord A exon
chr9:43134268-43134364
Coord C2 exon
chr9:43134036-43134152
Length
97 bp
Sequences
Splice sites
3' ss Seq
CAATGTCTTCCCACCCCTAGAAC
3' ss Score
8.59
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACCGAGTGCTTCAACTTCATCCGCTTCCTTCAGCCATACAACGCCTCCCATCTGTACGTTTGTGGTACCTATGCCTTCCAGCCCAAGTGCACCTACATC
Seq A exon
AACATGCTCACGTTCACCTTGGATCGTGCAGAATTTGAGGACGGGAAGGGTAAATGCCCTTACGACCCAGCTAAGGGCCACACTGGACTCCTTGTGG
Seq C2 exon
ATGGTGAACTGTACTCGGCTACACTCAATAACTTCCTGGGCACAGAGCCGGTTATCCTTCGAAACATGGGGCCCCACCACCCCATCAAGACGGAGTACCTGGCTTTTTGGTTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016254-'19-11,'19-10,20-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.5=100)
A:
PF0140314=Sema=FE(7.5=100)
C2:
PF0140314=Sema=FE(9.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTCAGCCATACAACGCC
R:
AGGTACTCCGTCTTGATGGGG
Band lengths:
175-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]